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IVAN COLUZZA University of Wien

SPEAKERS

The role of directional interactions in the designability of generalized heteropolymers

Heteropolymers are important examples of self-assembling systems. However, in the design of artificial heteropolymers the control over the single chain self-assembling properties does not reach that of the natural bio-polymers, and in particular proteins. Here, we introduce a sufficiency criterion to identify polymers that can be designed to adopt a predetermined structure and show that it is fulfilled by polymers made of monomers interacting through directional (anisotropic) interactions. The criterion is based on the appearance of a particular peak in the radial distribution function, that we show being a universal feature of all designable heteropolymers, as it is present also in natural proteins. Our criterion can be used to engineer new self-assembling modular polymers that will open new avenues for applications in materials science.

ORGANISERS

Recent developments and perspectives in the physics of the protein folding

ACHILLE GIACOMETTI University of Venice Ca' Foscari

EMANUELE LOCATELLI University of Wien

Coarse graining strategies for the self-assembly of colloidal and polymeric systems

Colloidal and polymeric systems have experienced, in the last decade, a flourishing of novel applications in diverse fields, mostly thanks to the possibility of tuning the interactions at the microscale, leading to the formation of super-molecular constructs that form spontaneously over different time scales. Understanding these self-assembly properties is of vital importance for the modelization of biological matter and for the design of innovative materials. In this endeavour, alongside various theoretical approaches, numerical simulations have been employed extensively, but, even with present-day computing power, a full monomer description of such systems remains out of reach. For this reason, precise and efficient coarse-grained methods are required in order to examine their structural, dynamical and  thermodynamical properties at long time scales. We investigate the self-assembly of different colloidal and polymeric systems, modeling chemical complexity, topological complexity and electrostatic interactions through different level of coarse-graining. In particular, we bring forward three examples: telechelic star polymers[1-3], heterogeneously charged colloids[4,5] (Inverse Patchy Colloids) and DNA constructs (nanostars[6] and dendrimers). In all cases, precise coarse-grained approaches and smart simulation techniques have successfully led to the prediction of self-assembling scenarios which, in some cases, have been also observed experimentally.   

 

 

[1] B. Capone, I. Coluzza, F. LoVerso, C.N. Likos, R. Blaak, Physical Review Letters, 109, no. 23, 238301, (2012).

[2] L. Rovigatti, B. Capone, C.N. Likos, Nanoscale, 8, no. 6, 3288–3295, (2016).

[3] I. C. Gârlea, E. Bianchi, B. Capone, L. Rovigatti, C. N. Likos Current Opinion in Colloid & Interface Science 30, 1 (2017) 

[4] E. Bianchi, P. D.J. van Oostrum, C. N. Likos, G. Kahl, Current Opinion in Colloid & Interface Science, 30, 8-15, (2017).

[5] S. Ferrari, E. Bianchi, G. Kahl, Nanoscale, 9, 1956-1963, (2017). 

[6] E. Locatelli, P. H. Handle, C. N. Likos, F. Sciortino, L. Rovigatti, ACS Nano, 11, 2094–2102, (2017) .

Colloidal and polymeric systems have assumed a paramount role for the community of Soft Matter physicists and material scientists, not only as test ground for equilibrium and non-equilibrium statistical mechanics. Recently, their importance has increased, most and foremost, thanks to the plethora of application in diverse fields, ranging from drug delivery and cancer treatment to novel materials for aerospace industry, food processing and sustainable development. Much of this success is due to the possibility of tuning the interactions between the microscopic constituents of the system, possibly leading to the formation of super-molecular constructs that form spontaneously over different time scales. 

Self-assembling knots:

bridging the gap between theory and experiments

MATTIA MARENDA SISSA

CRISTIAN MICHELETTI SISSA

ENZO ORLANDINI University of Padua 

Self-assembling knots and links

Directed self-assembly into open colloid liquid crystal phases

FLAVIO ROMANO University of Venice Ca' Foscari 

Beyond patchy colloids:

patchy models at the atomic and molecular scale

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LORENZO ROVIGATTI University of Oxford 

FRANCESCO SCIORTINO University of Rome La Sapienza

Some general comments on self-assembly and methods for evaluating  cluster free energies

Designing a topological filter:
Transport of linear and ring polymers in micro-fluidic devices

Ring polymers are an important class of biological and synthetic macromolecules [1, 2]. Due to the lack of free ends, they are expected to show distinct behaviour compared to their linear counterparts, as for example with respect to migration, rheology or disentanglement [3]. This simulation study aims at addressing the question whether linear and unknotted ring polymers are transported distinctly in micro- fluidic devices. Hydodynamics is taken into account by employing Multi-Particle Collsion Dynamics [4]. Although a bare slit channel is not sufficient to separate them for all investigated rigidities, we propose a filter by decorating the channel walls with attractive spots. We show that the spots can capture the linear chain while allowing the rings to "roll along the tracks" that these spots form. This mechanism holds true, since spots induce a reorientation of ring polymers close to the decorated surface [5, 6]. In doing so, ring polymers show up to an order of magnitude increase in transport compared to linear chains [6]. At the same time, and for intermediate driving pressure gradients along the channel, a crossover regime appears in which the linear chains are transported faster than the rings due to incessant adsorption-desorption processes that are active for the former but not for the latter. Our work demonstrates the possibility to employ micro-fluidic devices in order to achieve separation of topologically distinct states of polymeric macromolecules.

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[1]  Lasda, E.; Parker, R. RNA 2014, 20, 1829–1842.

[2]  McLeish, T. Science 2002, 1740, 2001–2002.

[3]  Kapnistos, M.; Lang, M.; Vlassopoulos, D.; Pyckhout-Hintzen, W.; Richter, D.; Cho, D.; Chang, T.; Rubinstein, M. Nature Materials 2008, 7, 997–1002.

[4]  Malevanets, A.; Kapral, R. Journal of Chemical Physics 1999, 110, 8605–8613.

[5]  Poier, P.; Egorov, S. A.; Likos, C. N.; Blaak, R. Soft Matter 2016, 12, 7983–7994.

[6]  Weiss, L. B.; Nikoubashman, A.; Likos, C. in preparation 2017, xx, xx–xx.

LISA WEISS University of Wien 

CRISTIAN MICHELETTI SISSA

ENZO ORLANDINI University of Padua 

FRANCESCO SCIORTINO University of Rome La Sapienza

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